PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_45091g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 348aa    MW: 39089.6 Da    PI: 7.0242
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_45091g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.3e-131562248
                     SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +WT+ Ed +l ++++ +G +  W+  a++ g++Rt+k+c++rw++yl
    MA_45091g0010 15 AAWTKTEDMILSQYIRVHGDRgGWTNLAKKAGLKRTGKSCRLRWLNYL 62
                     58*****************99*************************97 PP

2Myb_DNA-binding52.61.1e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++Edel+++++++lG++ W++Ia +++ gRt++++k++w+++l
    MA_45091g0010  68 RGNISADEDELIIRLHRLLGNR-WSLIAGRLP-GRTGNEIKNYWNTHL 113
                      7899******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.753962IPR017930Myb domain
SuperFamilySSF466896.12E-2512109IPR009057Homeodomain-like
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002494.7E-121562IPR001005SANT/Myb domain
CDDcd001672.70E-81662No hitNo description
Gene3DG3DSA:1.10.10.604.1E-211669IPR009057Homeodomain-like
PROSITE profilePS5129426.84363117IPR017930Myb domain
SMARTSM007173.1E-1667115IPR001005SANT/Myb domain
PfamPF002495.9E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2570117IPR009057Homeodomain-like
CDDcd001673.89E-1272113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDGSPCCSKE GLNRAAWTKT EDMILSQYIR VHGDRGGWTN LAKKAGLKRT GKSCRLRWLN  60
YLRPDIKRGN ISADEDELII RLHRLLGNRW SLIAGRLPGR TGNEIKNYWN THLSKKLLSM  120
NDSQTNSSTQ YLKTRSKPPF TLQNHVFKTT AVRITTAVRH SATVRPNGSN GHGCSNLSSD  180
EAYKLCNAKE TPNSSKSWGD LPANNSITDN HSDRIAFGMA DVVKAEARNS TCTMSSLVDK  240
ESPHSDHSAE DTATLAESLL DMNGLSSPHW NLLFSPSDYS KDFGVEELYR GAAMEMNEFE  300
DIMCSYQSNM QRVNSLTVAD HEAMEGFYDN PQHVNWIHEL DYLHDLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-221211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ61e-148B8LMJ6_PICSI; Putative uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-58myb domain protein 3